Semiparametric estimation exploiting covariate independence in two-phase randomized trials.
James Y. Dai, Michael LeBlanc, and Charles Kooperberg.
Biometrics, in press.
Semiparametric estimation exploiting covariate independence in two-phase randomized trials.
James Y. Dai, Michael LeBlanc, and Charles Kooperberg.
Biometrics, in press.
Increasing the power of identifying gene x gene interactions
in genome-wide association studies.
Charles Kooperberg and Michael LeBlanc.
Genetic Epidemiology, 32, 255-263.
The software for approximate power calculations is
available as the CRAN package powerGWASinteraction.
Calcium plus vitamin D supplementation and the risk of breast cancer
Rowan T. Chlebowski, Karen C. Johnson, Charles Kooperberg, Mary Pettinger, Jean Wactawski-Wende,
Tom Rohan, Jacques Rossouw, Dorothy Lane, Mary Jo O’ Sullivan, Shagufta Yasmeen, Robert A. Hiatt,
James M. Shikany, Mara Vitolins, Janu Khandekar, F. Allan Hubbell.
Journal of the National Cancer Institute, 100, 1581-1590.
Variation in 24 hemostatic genes and associations with non-fatal myocardial infarction and ischemic stroke.
Nicholas L. Smith, Joshua C. Bis, Sara Biagiotti, Kenneth Rice, Thomas Lumley, Charles Kooperberg,
Kerri L. Wiggins, Susan R. Heckbert, Bruce M. Psaty.
Journal of Thrombosis and Haemostasis, 6, 45-53.
Cystatin-C, Renal Function, and Incidence of Hip Fracture in Postmenopausal Women
Andrea Z. LaCroix, Jennifer S. Lee, LieLing Wu, Jane A. Cauley, Michael G. Shlipak, Susan M. Ott, John Robbins, J. David Curb, Meryl Leboff, Douglas C. Bauer, Rebecca D. Jackson, Charles L. Kooperberg, and Steven R. Cummings
Journal of the American Geriatrics Society, 56, 1434-1441.
Lipoprotein-associated phospholipase A2, hormone use, and the risk of ischemic
stroke in postmenopausal women.
Sylvia Wassertheil-Smoller, Charles Kooperberg, Aileen P. McGinn, Robert C. Kaplan,
Judith Hsia, Susan L. Hendrix, JoAnn Manson, Jeffrey S. Berger, Lewis H. Kuller,
Matthew A. Allison, and Alison E. Baird. Hypertension, 51, 1115-1122.
Walking speed and risk of incident ischemic stroke among postmenopausal women.
Aileen P. McGinn, Robert C. Kaplan, Joe Vegese, Daniel M. Rosenbaum, Bruce M. Psaty,
Alison E. Baird, John K. Lynch, Philip A. Wold, Charles Kooperberg, Joesph C. Larson,
and Sylvia Wassertheil-Smoller. Stroke, 39, 1233-1239.
Conjugated equine estrogens and breast cancer
risk in the Women's Health Initiative Clinical trial and Observational Study.
Ross L. Prentice, Rowan T. Chlebowski, Marcia L. Stefanick, JoAnn E. Manson,
Robert D. Langer, Mary Pettinger, Susan L. Hendrix, F. Allan Hubbell,
Charles Kooperberg, Lewis H. Kuller, Dorothy S. Lane, Anne McTiernan,
Mary Jo O'Sullivan, Jacques E. Eossouw and Garnet L. Anderson.
American Journal of Epidemiology, 167, 1407-1415.
Estrogen plus progestin therapy and breast cancer among recently
postmenopausal women: further results from the Women's Health Initiative.
Ross L. Prentice, Rowan T. Chlebowski, Marcia L. Stefanick, JoAnn E. Manson,
Mary Pettinger, Susan L. Hendrix, F. Allan Hubbell,
Charles Kooperberg, Lewis H. Kuller, Dorothy S. Lane, Anne McTiernan,
Mary Jo O'Sullivan, Jacques E. Eossouw and Garnet L. Anderson.
American Journal of Epidemiology, 167, 1297-1216.
Associations of serum sex hormone-binding globulin and sex hormone concentrations with hip fracture risk in postmenopausal women
Jennifer S. Lee, Andrea Z. LaCroix, Liling Wu, Jane A. Cauley, Rebecca Jackson
Charles Kooperberg, John Robbins Cora E. Lewis, Doug C. Bauer, and Steve R. Cummings.
Journal of Clinical Endocrinology & Metabolism, 93, 1796-1803.
Statin use and incident frailty in women ages 65 and older: Prospective
findings from the Women's Health Initiative Observational Study,
Andrea Z. LaCroix, Shelly L. Gray, Aaron Aragaki, Barbara B. Cochrane,
Anne B. Newman, Charles Kooperberg,
Henry Black, J. David Curb, Philip Greenland, and Nancy F. Woods.
Journal of Gerontology A Biological Sciences, 63, 369-375.
Inflammation and hemostasis biomarkers for predicting risk of ischemic stroke in women: The
Women's Health Initiative Ibservational Study.
Robert C. Kaplan, Aileen P. McGinn, Alison E. Baird, Susan L. Hendrix, Charles Kooperberg,
John K. Lynch, Daniel M. Rosenbaum, Karen C. Johnson, Howard D. Strickler, and Sylvia Wasserthei-Smoller. Journal of Stroke and Cerebrovascular Diseases, 17, 344-355.
Inflammatory, lipid, thrombotic, and genetic markers of
coronary heart disease risk in the Women's Health Initiative trials of
hormone therapy.
Jacques E Rossouw, Mary Cushman, Philip Greenland, D. M. Lloyd-Jones, Paul Bray,
Charles Kooperberg, Mary Pettinger, Jennifer Robinson, Susan Hendrix, and Judith Hsia.
Archives of Internal Medicine, 168, 2245-2263.
Can biomarkers identify women at increased stroke risk?
The Women's Health Initiative hormone trials.
Charles Kooperberg, Mary Cushman, Judith Hsia, Jennifer G. Robinson,
Aaron K. Aragaki, John K. Lynch, Alison E. Baird, Karen C. Johnson,
Lewis H. Kuller, Shirley A. A. Beresford, and Beatriz
Rodriguez.
PLoS Clinical Trials, 2, e28.
Monitoring and reporting of the Women's Health Initiative
randomized hormone therapy trials.
Garnet L. Anderson, Charles Kooperberg, Nancy Geller, Jacques E. Roussouw,
Mary Pettinger, Ross L. Prentice.
Clinical Trials, 4, 207-217.
Mutant huntingtin's effects on striatal gene expression in mice
recpitulate changes observed in human Huntington's disease brain and do not
differ with mutant huntingtin length or wild-type huntingtin dosage.
Alexandre Kuhn, Darlene R. Goldstein, Angela Hodges, Andrew D. Strand, Thierry Sengstag,
Charles Kooperberg, Kristina Bacanovic, Mahmoud A. Pouladi, Kirupa Sathasivam,
Jang-Ho J. Cha,
Anthony J. Hannan, Michael R. Hayden, Blair R. Leavitt, Stephen B. Dunnett, Robert J. Ferrante,
Roger Albin, Peggy Shelbourne, Mauro Delorenzi, Sarah J. Augood, Richard L. M. Faull,
James M. Olson, Gillian P. Bates, Lesley Jones, and Ruth Luthi-Carter.
Human Molecular Genetics, 16, 1845-1861.
Conservation of regional gene expression in mouse and human brain.
Andrew D. Strand, Aaron K. Aragaki, Zachary C. Baquet, Angela Hodges, Philip Cunningham,
Peter Holmans, Kevin R. Jones, Leslie Jones, Charles Kooperberg, and James M. Olson.
PLoS Genetics, 3, e59.
Renin-angiotensin system haplotypes and the risk of
myocardial infarction and stroke in pharmacologically
treated hypertensive patients.
Kristen D. Marciante, Joshua C. Bis, Marc J. Rieder,
Alexander P. Reiner, Thomas Lumley,
Stephanie A. Monks, Charles Kooperberg,
Christopher Carlson, Deborah A. Nickerson, Susan R. Heckbert
and Bruce M. Psaty.
American Journal of Epidemiology, 166, 19-27.
Logic regression for analysis of the association between
genetic variation in the renin-angiotensin system and myocardial
infarction or stroke.
Charles Kooperberg, Joshua C. Bis, Kristin D. Marciante, Susan R. Heckbert,
Thomas Lumley, and Bruce M. Psaty. American Journal of Epidemiology,
165, 334-343.
Intra-strand annealing leads to the formation of larger DNA palindrome and determine the boundaries of genome amplification in human cancer.
Hisashi Tanaka and Yi Cao and Donald A. Bergstrom and Stephen J. Tapscott and Meng-Chao Yao.
Mollecular and Cellular Biology, 27, 1993-2002.
Expression profiling of Huntington's Disease models suggests BDNF
depletion plays a major role in striatal degeneration.
Andrew D. Strand, Zachary C. Baquet, Aaron K. Aragaki, Peter Holmans,
Lichuan Yang, Carine Cleren, M. Flint Beal,
Leslie Jones, Charles Kooperberg, James M. Olson, and Kevin R. Jones.
Journal of Neuroscience, 27, 11758-11768.
Factors associated with five year risk of hip fracture in postmenopausal women:
from the Women's Health Initiative.
John Robbins, Aaron K. Aragaki, Charles Kooperberg, Nelson B. Watts,
Jean Wactawski-Wende, Rebecca D. Jackson, Cora E. Lewis, Zhao Chen,
Marcia L. Stefanick and Jane A. Cauley.
Journal of the American Medical Association, 298, 2389-2398.
Imputation methods to improve inference in SNP association studies
James Y. Dai, Ingo Ruczinski, Micheal LeBlanc, and Charles Kooperberg,
Genetic Epidemiology, 30, 690-702.
Effects of conjugated equine estrogen on stroke in the
Women's Health Initiative.
Susan L. Hendrix. Sylvia Wassertheil-Smoller, Karen C. Johnson, Barbara V. Howard,
Charles Kooperberg, Jacques E. Roussouw, Maurizio Trevisan, Aaron Aragaki, Alison E. Baird,
Paul F. Bray, Julie E. Bering, Michael H. Criqui, David Herrington, John K. Lynch, Stephen R. Rapp,
and James Torner. Circulation, 113, 2425--2434.
Assessment of the relationship between pre-chip and post-chip variables for Affymetrix GeneChip expression data.
Leslie Jones, Darlene R, Goldstein, Gareth Hughes, Andrew D. Stand,
Francois Collin, Stephen B. Dunnett, Charles Kooperberg, Aaron Aragaki,
James M. Olson, Sarah J. Augood, Richard L. M. Faull,
Ruth Luthi-Carter, Valentina Moskvina, and Angela K. Hodges.
BMC Bioinformatics, 7, 211.
Regional and cellular gene expression changes in human Huntington's disease brain.
Angela Hodges, Andrew D. Strand, Aaron K. Aragaki, Alexandre Kuhn, Thierry Sengstag, Gareth Hughes,
Lyn A. Elliston, Cathy Hartog,
Darlene R. Goldstein, Doris Thu,
Zane R. Hollingsworth,
Francois Collin, Beth Synek, Peter A. Holmans, Anne B. Young, Nancy S. Wexler,
Mauro Delorenzi, Charles Kooperberg, Sarah J. Augood, Richard L.M. Faull,
James M. Olson, Lesley Jones, and Ruth Luthi-Carter
Human Molecular Genetics, 15, 965-977.
Extreme regression.
Michael LeBlanc, James Moon, and Charles Kooperberg.
Biostatistics, 7, 71-84.
Calcium and vitamin D supplementation and the risk of colorectal cancer.
Jean Wactawski-Wende, Jane Morley Kotchen,
Garnet L. Anderson, ..., Charles L. Kooperberg, ...New England Journal of Medicine, 354, 684-696.
Global and gene-specific analyses show distinct roles for Myod and Myog at
a common set of promoters.
Yi Cao, Roshan M. Kumar, Bennett H. Penn, Charlotte A. Berkes, Charles Kooperberg, Laurie A. Boyer, Richard A. Young, and Stephen J Tapscott.
The EMBO Journal, 25, 502-511.
Electrocardiographic abnormalities that predict coronary heart disease
events and mortality in postmenopausal qomen: The Women's Health Initiative.
Pentti M. Rautaharju, Charles Kooperberg, Joseph C. Larson, and Andrea LaCroix.
Circulation, 113, 473-480.
Electrocardiographic predictors
of incident congestive heart failure and all-cause mortality in postmenopausal women:
The Women's Health Initiative.
Pentti M. Rautaharju, Charles Kooperberg, Joseph C. Larson, and Andrea LaCroix.
Circulation, 113, 481-490.
Significance Testing for Small Sample Microarray Experiments.
Charles Kooperberg, Aaron Aragaki, Andrew D. Strand, and James M. Olson.
Statistics in Medicine, 24, 2281-2298,
Gene expression in Huntington's disease skeletal muscle: a potential
biomarker.
Andrew D. Strand, Aaron K. Aragaki, Dennis Shaw, Thomas Bird, Janice Holton,
Christopher Turner, Stephen J. Tapscott, Sarah J. Tabrizi, Anthony H. Schapira,
Charles Kooperberg, and James M. Olson.
Human Molecular Genetics, 14, 1863-1876.
Prior oral contraception and postmenopausal fracture: a Women's Health
Initiative observational cohort study.
David Barad, Charles Kooperberg, Jean Wactawski-Wende, James Liu,
Susan L. Hendrix, and Nelson B. Watts.
Fertility and Sterility, 84, 374-383.
Identifying target populations for screening or not screening using
Logic Regression.
Holly Janes, Margaret Pepe, Charles Kooperberg, and Polly Newcomb.
Statistics in Medicine, 24, 1321-1338.
Identifying interacting SNPs using Monte Carlo Logic Regression.
Charles Kooperberg and Ingo Ruczinski.
Genetic Epidemiology, 28, 157-170.
The software described in Identifying interacting SNPs using Monte Carlo Logic Regression. is
available: click here for the
Logic Regression
program.
Comparison
of Parametric, Bootstrap, and Bayesian Approaches to Obtaining
Confidence Intervals for Logspline Density
Estimation.
Charles Kooperberg and Charles J. Stone,
Journal of Graphical and Computational Statistics, 13, 106-122.
Exploring interactions in high-dimensional genomic data - an overview of
Logic Regression, with applications.
Ingo Ruczinski, Charles Kooperberg, and Michael LeBlanc.
Journal of Multivariate Analysis, 90, 178-195.
Comparison of self-report, discharge diagnosis, and adjudication of
cardiovascular events in the Women's Health Initiative.
Susan R. Heckbert, Charles Kooperberg, Monika M. Safford, Bruce M. Psaty,
Judith Hsia, Anne McTiernan, A. Barbour, J. M. Gaziano, W. H. Frishman, and
J. David Curb.
American Journal of Epidemiology, 160, 1152-1158.
Validity of Self-Report for Fractures among a Postmenopausal Multiethnic Cohort:
Results from the Women's Health Initiative Observational Study and Clinical Trials.
Zhao Chen, Charles Kooperberg, Mary B. Pettinger, T. Bassford, Jane A. Cauley, Andrea Z. LaCroix, Cora E. Lewis,
S. Kipersztok, M. C. Borne, and Rebecca D. Jackson,
Menopause, 11, 264-274.
The histone modification pattern of active genes revealed through
genome-wide chromatin analysis of a higher eukaryote.
Dirk Schubeler, David M. MacAlpine, David Scalzo,
Christiane Wibelauer, Charles Kooperberg, Fred van Leeuwen,
Daniel E. Gottschling, Laura P. O'Neill, Bryan M. Turner,
Jeffrey Delrow, Stephen P. Bell, and Mark Groudine.
Genes and development,
18, 1263-1271.
PSA
and free PSA in early detection of prostate cancer: do
combination tests improve detection?
Ruth Etzioni, Seth Falcon, Peter Gann, Charles Kooperberg,
David F. Penson, and Meir J. Stampfer.
Cancer Epidemiology, Biomarkers and Prevention, 13, 1640-1645.
A Prospective Study of Recreational Physical Activity and the Risk of Breast Cancer in Women Aged 50-79
Years. Anne McTiernan, Charles Kooperberg, Emily White, Sara Wilcox, Ralph Coates, Lucile L. Adams-Campbell,
Nancy Woods, and Judith Ockene.
Journal of the American Medical Association, 290, 1331-1336.
Effect of estrogen plus progestin on stroke in postmenopausal women: the Women's Health Initiative.
Sylvia Wassertheil-Smoller, Susan Hendrix, Marian Limacher, Gerardo Heiss,
Charles Kooperberg, Alison Baird, Theodore Kotchen, J. David Curb, Henry Black, Jacques Rossouw,
Aaron Aragaki, Monika Safford, Evan Stein, Somchai Laowattana,,and W. Jerry Mysiw. Journal of the American Medical Association, 289, 2673-2684.
A Rapid Neurobehavioral Assessment Reveals that
FK506 Delays Symptom Onset in R6/2 Huntington's Disease Mice.
Sally Ditzler, Jennifer Stoeck, Michael LeBlanc, Charles Kooperberg, Stacey Hansen,
Leslie Coppin, and James M. Olson. Preclinica, 1, 115-126.
Combining biomarkers to detect disease with aplication to prostate cancer.
Ruth Etzioni, Charles Kooperberg, Margaret Pepe, Robert Smith, and Peter Gann,
Biostatistics, 4 523-538.
Directed indices for exploring gene expression data.
Michael LeBlanc, Charles Kooperberg, Tom Grogan, and Tom Miller,
Bioinformatics, 19, 686-693.
The software for the gene index is
available: click here for the
R code.
Yeast Usw 1p forms two separable complexes with overlapping, yet distinct,
in vitro and in vivo activities.
Jay Vary, Vamsi Gangaraju, Jun Qin, Carolyn Church Landel, Charles Kooperberg,
Blaine Bartholomew, and Toshio Tsukiyama.
Molecular and Cellular Biology, 23, 80-91.
Logic regression.
Ingo Ruczinsiki, Charles Kooperberg, and Michael L. LeBlanc,
Journal of Graphical and Computational Statistics, 12, 475-511.
The software described in Logic Regression is
available: click here for the
Logic Regression
program.
Outcomes Assertainment and Adjudication Methods in the Women's Health Initiative.
J. David Curb, Anne McTiernan, Susan Heckbert, Charles Kooperberg, Janet Stanford,
Michael Nevitt, Karen Johnson, Lori Proulx-Burns, Lisa Pastore, Michael Criqui,
and Sandra Daugherty.
Annals of Epidemiology,, 13, S122-S128.
Genome-wide DNA replication profile for Drosophila melanogaster: A link between transcription and DNA replication.
Dirk Schubler, David Scalzo, Charles Kooperberg, Bas van Steensel,
Jeffrey Delrow, and Mark Groudine, Nature Genetics, 32, 438-442.
Evaluating test-statistics to select interesting genes in microarray experiments.
Charles Kooperberg, Simonetta Sipione, Michael L. LeBlanc, Andrew D. Strand, Elena Cattaneo,
and James M. Olson.
Human Molecular Genetics, 11, 2223-2232.
Estimating significance levels for gene expression changes observed with oligonucleotide arrays.
Andrew D. Strand, James M. Olson, and Charles Kooperberg.
Human Molecular Genetics, 11, 2207-2221.
Dysregulation of gene expression in the R6/2 model of polyglutamine disease:
parallel changes in muscle and brain.
Ruth Luthi-Carter, Sarah A. Hanson, Andrew D. Strand, Donald A. Bergstrom, Wanjoo Chun, Nikki L. Peters, Annette M. Woods, Edmond Y.
Chan, Charles Kooperberg, Dimitri Krainc, Anne B. Young, Stephen J. Tapscott, and James M. Olson.
Human Molecular Genetics, 11, 1911-1926.
Polyglutamine and transcription: gene expression changes
shared by DRPLA and Huntington's disease mouse models
reveal context-independent effects.
Ruth Luthi-Carter, Andrew D. Strand, Sarah. A. Hanson, Charles Kooperberg,
Gabrielle Schilling, Albert R. LaSpada, Diane M. Merry, Anne B. Young, Christopher A. Ross,
David R. Borchelt, and James M. Olson.
Human Molecular Genetics, 11, 1927-1937.
Increased huntingtin protein length reduces the number of polyglutamine-induced gene expression changes in mouse models of
Huntington's disease.
Edmond Y. W. Chan, Ruth Luthi-Carter, Andrew Strand, Steven M. Solana,
Sarah A. Hanson, Molly M. DeJohn, Charles Kooperberg, Kathryn
O. Chase, Marian DiFiglia, Anne B. Young, Blair R. Leavitt,
Jang-Ho J. Cha, Neil Aronin, Michael R. Hayden, and James M. Olson.
Human Molecular Genetics, 11, 1939-1951.
Early transcriptional profiles in Huntington inducible striatal cells by microarray analyses.
Simonetta Sipione, Dorotea Rigamonti, Marta Valenza, Chiara Zucatto, Luciano Conti, Joel I. Pritchard,
Charles Kooperberg, James M. Olson, and Elena Cattaneo.
Human Molecular Genetics, 11, 1953-1965.
Risk and benefit of estrogen plus progestin in healthy postmenopausal women:
Principal results from the Women's Health Initiative randomized controlled trial.
Writing Group for the Women's Health Initiative.
Journal of the American Medical Association, 288, 321-333.
Distribution of beta sheets in proteins with application to
structure prediction.
Ingo Ruczinsiki, Charles Kooperberg, Richard Bonneau, and David Baker.
Proteins,48, 85-97.
Spline adaptation in extended linear models (with discussion).
Mark H. Hansen and Charles Kooperberg.
Statistical Science, 17, 2-51.
Improved background correction for spotted DNA microarrays.
Charles Kooperberg, Thomas G. Fazzio, Jeffrey J. Delrow, and Toshio Tsukiyama.
Journal of Computational Biology, 9, 55-66.
The software for background correction is
available: click here for the
R/S code.
Logic Regression - methods and software.
Ingo Ruczinski, Charles Kooperberg, and Michael LeBlanc.
Proceedings
of the MSRI workshop on Nonlinear Estimation and Classification
(Eds: D. Denison, M. Hansen, C. Holmes, B. Mallick, B. Yu), Springer: New York,
333-344.
Confidence intervals for logspline density estimation.
Charles Kooperberg and Charles J. Stone.
Proceedings
of the MSRI workshop on Nonlinear Estimation and Classification
(Eds: D. Denison, M. Hansen, C. Holmes, B. Mallick, B. Yu), Springer: New York,
285-296.
Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin
remodeling complexes in transcriptional repression.
Thomas G. Fazzio, Charles Kooperberg, Jesse P. Goldmark,
Cassandra Neal, Ryan Basom, Jeffrey Delrow and Toshio Tsukiyama.
Molecular and Cellular Biology, 21, 6450-6460.
Sequence Analysis using Logic Regression.
Charles Kooperberg, Ingo Ruczinski, Michael L. LeBlanc and Li Hsu.
Genetic Epidemiology,
21, S626-S631.
Functional ANOVA modeling for proportional hazards regression.
Jianhua Z. Huang, Charles Kooperberg, Charles J. Stone, and
Young K. Truong. Annals of Statistics, 28,
961-999.
Logspline density estimation for binned data.
Ja-Yong Koo and Charles Kooperberg.
Statistics and Probability Letters, 46, 133-147.
Correlates of serum lycopene in older women.
Deborah Casso, Emily White, Ruth E. Patterson, Tanya Agurs-Collins,
Charles Kooperberg, and Pamela S. Haines. Nutrition and Cancer,
36 163-169.
Stochastic Optimization Methods to fit Polyclass and Feed-Forward
Neural Network Models. Charles Kooperberg and Charles J. Stone.
Journal of Computational and Graphical Statistics, 8,,
169-189.
Improved recognition of native-like protein structures using a combination of
sequence dependent and sequence independent features of proteins.
Kim T. Simons, Ingo Ruczinski, Charles Kooperberg, Brian Fox,
Chris Bystroff, and David Baker.
Proteins, 34, 82-95.
Logspline density estimation under censoring and truncation.
Ja-Yong Koo, Charles Kooperberg and Jinho Park.
Scandinavian Journal of Statistics, 26, 87-105.
Linear regression for bivariate censored data via multiple imputation.
Wei Pan and Charles Kooperberg.
Statistics in Medicine, 18, 3111-3121.
Triogram models.
Mark Hansen, Charles Kooperberg and Sylvain Sardy.
Journal of The American Statistical Association, 93,
101-119.
Bivariate density estimation with an application to survival analysis.
Charles Kooperberg.
Journal of Computational and Graphical Statistics, 7
322-341.
The use of polynomial splines and their tensor products in
extended linear modeling (with discussion). Charles J. Stone, Mark Hansen, Charles
Kooperberg, and Young K. Truong.
Annals of Statistics, 25, 1371-1470.
Polychotomous Regression. Charles
Kooperberg, Smarajit Bose and Charles J. Stone.
Journal of The American Statistical Association, 92,
117-127.
The software described in Polychotomous Regression is
available: click here for the
POLYCLASS
program.
Hazard Regression with Interval-Censored Data.
Charles Kooperberg and Douglas B. Clarkson.
Biometrics, 53, 1485-1494.
Assembly of protein tertiary structures
from fragments with similar local sequences using simulated
annealing and Bayesian scoring functions.
Kim T. Simons, Charles Kooperberg, Enoch Huang and David Baker.
Journal of Molecular Biology,268,209-225.
Predictive Oscillation Patterns: A Synthesis of Methods
for Spatial-Temporal Decomposition of Random Fields.
Charles Kooperberg and Finbarr
O'Sullivan.
Journal of The American Statistical Association, 91,
1485-1496.
Statistical modeling to predict elective surgery time:
comparison with a computer scheduling
system and surgeon-provided estimates.
Ian H. Wright, Charles Kooperberg, Barbara A. Bonar, and Gerard Bashein.
Anesthesiology, 85, 1235-1245.
On Conditional and Intrinsic Autoregressions.
Julian Besag and Charles Kooperberg.
Biometrika, 84, 733-746.
Hazard Regression. Charles
Kooperberg, Charles J. Stone and Young K. Truong.
Journal of the American Statistical
Association, 90, 78-94.
The software described in Hazard Regression is
available: click here for the
HARE and HEFT
programs.
A summary (only 4 pages!) of this paper, which is an
entry to the Encyclopedia of Statistical Sciences, is available
here.
Hazard Regression (Polynomial Splines in Survival Analysis).
Charles Kooperberg, Charles J. Stone, Young K. Truong (1998).
In
Encyclopedia of Statistical Sciences (S. Kotz, C. B. Read, D. L.
Banks, eds.), Update Volume 2, 302-305.)
The L2 Rate of Convergence for Hazard Regression. Charles
Kooperberg, Charles J. Stone and Young K. Truong.
Scandinavian Journal of Statistics,
22, 143-158.
Logspline Estimation of a Possibly Mixed Spectral Distribution.
Charles Kooperberg, Charles J. Stone and Young K. Truong.
Journal of Time Series Analysis, 16, 359-388.
The software described in Logspline Estimation of a Possibly Mixed
Spectral Distribution is
available: click here for the
LSPEC
program.
Rate of Convergence for Logspline Spectral Density Estimation.
Charles Kooperberg, Charles J. Stone and Young K. Truong.
Journal of Time Series Analysis, 16, 389-402.
Trees and Splines in Survival Analysis.
Orna Intrator and Charles Kooperberg.
Statistical Methods in Medical Research, 5,
237-261.
Is there evidence of multiple
equilibria in planetary-scale amplitude statistics?
Gregor Nitsche, John. M. Wallace, and Charles Kooperberg.
Journal of the Atmospheric Sciences, 51, 314-322.
Logspline Density Estimation for Censored Data. Charles Kooperberg and
Charles J. Stone.
Journal of Computational and Graphical Statistics, 1,
301-328.
The software described in Logspline Density Estimation for Censored
Date is
available: click here for the
LOGSPLINE
program.
Using Logistic Regression to Estimate the Adjusted
Attributable Risk of Low Birth Weight in an Unmatched Case Control Study.
Charles Kooperberg and Diana B. Petitti.
Epidemiology, 2,
363-366.
A study of logspline density estimation. Charles Kooperberg and
Charles J. Stone.
Computational Statistics and Data Analysis, 12,
327-348.
Robust confidence bounds for
extreme upper quantiles.
Leo Breiman, Charles J. Stone and Charles Kooperberg.
Journal of Statistical Computation and Simulation,37, 127-149.
Circuit layout and yield.
Charles Kooperberg.
IEEE Journal of Solid State Circuits, 23, 887-892.